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1

A novel class of small RNAs bind to MILI protein in mouse testes

Aravin, Alexei, Gaidatzis, Dimos, Pfeffer, Sébastien, Lagos-Quintana, Mariana, Landgraf, Pablo, Iovino, Nicola, Morris, Patricia, Brownstein, Michael J., Kuramochi-Miyagawa, Satomi, Nakano, Toru, Chie

Journal:

Year:

2006

Language:

english

File:

PDF, 364 KB

english, 2006

2

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

Tam, Oliver H., Aravin, Alexei A., Stein, Paula, Girard, Angelique, Murchison, Elizabeth P., Cheloufi, Sihem, Hodges, Emily, Anger, Martin, Sachidanandam, Ravi, Schultz, Richard M.

Journal:

Year:

2008

Language:

english

File:

PDF, 465 KB

english, 2008

3

PIWI-interacting small RNAs: the vanguard of genome defence

Siomi, Mikiko C., Sato, Kaoru, Pezic, Dubravka, Aravin, Alexei A.

Journal:

Nature Reviews Molecular Cell Biology

Year:

2011

Language:

english

File:

PDF, 3.17 MB

english, 2011

4

StellateRepeats: Targets of Silencing and Modules Causingcis-Inactivation andtrans-Activation

Vladimir A. Gvozdev, Alexei A. Aravin, Yury A. Abramov, Mikhail S. Klenov, Galina L. Kogan, Sergei A. Lavrov, Natalia M. Naumova, Oxana M. Olenkina, Alexei V. Tulin, Vasili V. Vagin

Journal:

Year:

2003

Language:

english

File:

PDF, 184 KB

english, 2003

5

Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline

Alexei A. Aravin, Natalia M. Naumova, Alexei V. Tulin, Vasilii V. Vagin, Yakov M. Rozovsky, Vladimir A. Gvozdev

Journal:

Current Biology

Year:

2001

Language:

english

File:

PDF, 330 KB

english, 2001

6

Identification of clustered microRNAs using anab initioprediction method

Alain Sewer, Nicodème Paul, Pablo Landgraf, Alexei Aravin, Sébastien Pfeffer, Michael J Brownstein, Thomas Tuschl, Erik van Nimwegen, Mihaela Zavolan

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 518 KB

english, 2005

7

Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila

Julius Brennecke, Alexei A. Aravin, Alexander Stark, Monica Dus, Manolis Kellis, Ravi Sachidanandam, Gregory J. Hannon

Journal:

Year:

2007

Language:

english

File:

PDF, 1.73 MB

english, 2007

8

A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing

Pablo Landgraf, Mirabela Rusu, Robert Sheridan, Alain Sewer, Nicola Iovino, Alexei Aravin, Sébastien Pfeffer, Amanda Rice, Alice O. Kamphorst, Markus Landthaler, Carolina Lin, Nicholas D. Socci, Leand

Journal:

Year:

2007

Language:

english

File:

PDF, 1.32 MB

english, 2007

9

piRNAs Meet Mitochondria

Alexei A. Aravin, David C. Chan

Journal:

Developmental Cell

Year:

2011

Language:

english

File:

PDF, 63 KB

english, 2011

10

Identification and characterization of small RNAs involved in RNA silencing

Alexei Aravin, Thomas Tuschl

Journal:

Year:

2005

Language:

english

File:

PDF, 239 KB

english, 2005

11

Small RNA in the nucleus: the RNA-chromatin ping-pong

Ivan Olovnikov, Alexei A Aravin, Katalin Fejes Toth

Journal:

Current Opinion in Genetics & Development

Year:

2012

Language:

english

File:

PDF, 580 KB

english, 2012

12

A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice

Alexei A. Aravin, Ravi Sachidanandam, Deborah Bourc'his, Christopher Schaefer, Dubravka Pezic, Katalin Fejes Toth, Timothy Bestor, Gregory J. Hannon

Journal:

Year:

2008

Language:

english

File:

PDF, 2.09 MB

english, 2008

13

The Small RNA Profile during Drosophila melanogaster Development

Alexei A. Aravin, Mariana Lagos-Quintana, Abdullah Yalcin, Mihaela Zavolan, Debora Marks, Ben Snyder, Terry Gaasterland, Jutta Meyer, Thomas Tuschl

Journal:

Developmental Cell

Year:

2003

Language:

english

File:

PDF, 1.10 MB

english, 2003

14

Correction: Human MicroRNA Targets

John, Bino, Enright, Anton J., Aravin, Alexei, Tuschl, Thomas, Sander, Chris, Marks, Debora S.

Journal:

Year:

2005

Language:

english

File:

PDF, 29 KB

english, 2005

15

Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA

Olovnikov, Ivan, Chan, Ken, Sachidanandam, Ravi, Newman, Dianne K., Aravin, Alexei A.

Journal:

Year:

2013

Language:

english

File:

PDF, 972 KB

english, 2013

16

Prokaryotic Argonautes defend genomes against invasive DNA

Hur, Junho K., Olovnikov, Ivan, Aravin, Alexei A.

Journal:

Trends in Biochemical Sciences

Year:

2014

Language:

english

File:

PDF, 216 KB

english, 2014

17

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing

Le Thomas, Adrien, Stuwe, Evelyn, Li, Sisi, Du, Jiamu, Marinov, Georgi, Rozhkov, Nikolay, Chen, Yung-Chia Ariel, Luo, Yicheng, Sachidanandam, Ravi, Toth, Katalin Fejes, Patel, Dinshaw, Aravin, Alexei

Journal:

Genes & Development

Year:

2014

Language:

english

File:

PDF, 1.47 MB

english, 2014

18

To be or not to be a piRNA: genomic origin and processing of piRNAs

Adrien Le Thomas,Katalin Fejes Tóth,Alexei A Aravin

Journal:

Year:

2014

Language:

english

File:

PDF, 192 KB

english, 2014

19

Pitfalls of Mapping High-Throughput Sequencing Data to Repetitive Sequences: Piwi’s Genomic Targets Still Not Identified

Marinov, Georgi K., Wang, Jie, Handler, Dominik, Wold, Barbara J., Weng, Zhiping, Hannon, Gregory J., Aravin, Alexei A., Zamore, Phillip D., Brennecke, Julius, Toth, Katalin Fejes

Journal:

Developmental Cell

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

20

Non-coding RNAs in Transcriptional Regulation

Chen, Yung-Chia Ariel, Aravin, Alexei A.

Journal:

Current Molecular Biology Reports

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

21

Cytoplasmic Compartmentalization of the Fetal piRNA Pathway in Mice

Aravin, Alexei A., van der Heijden, Godfried W., Castañeda, Julio, Vagin, Vasily V., Hannon, Gregory J., Bortvin, Alex, Barsh, Gregory S.

Journal:

Year:

2009

Language:

english

File:

PDF, 5.59 MB

english, 2009

22

Human MicroRNA Targets

John, Bino, Enright, Anton J., Aravin, Alexei, Tuschl, Thomas, Sander, Chris, Marks, Debora S.

Journal:

Year:

2004

Language:

english

File:

PDF, 42 KB

english, 2004

23

MIWI2 and MILI Have Differential Effects on piRNA Biogenesis and DNA Methylation

Manakov, Sergei A., Pezic, Dubravka, Marinov, Georgi K., Pastor, William A., Sachidanandam, Ravi, Aravin, Alexei A.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

24

A Transgenerational Process Defines piRNA Biogenesis in Drosophila virilis

Le Thomas, Adrien, Marinov, Georgi K., Aravin, Alexei A.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

25

Erratum: MORC1 represses transposable elements in the mouse male germline

Pastor, William A., Stroud, Hume, Nee, Kevin, Liu, Wanlu, Pezic, Dubravka, Manakov, Sergei, Lee, Serena A., Moissiard, Guillaume, Zamudio, Natasha, Bourc’his, Déborah, Aravin, Alexei A., Clark, Amande

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 317 KB

english, 2015

26

MORC1 represses transposable elements in the mouse male germline

Pastor, William A., Stroud, Hume, Nee, Kevin, Liu, Wanlu, Pezic, Dubravka, Manakov, Sergei, Lee, Serena A., Moissiard, Guillaume, Zamudio, Natasha, Bourc’his, Déborah, Aravin, Alexei A., Clark, Amande

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.08 MB

english, 2014

27

Aub and Ago3 Are Recruited to Nuage through Two Mechanisms to Form a Ping-Pong Complex Assembled by Krimper

Webster, Alexandre, Li, Sisi, Hur, Junho K., Wachsmuth, Malte, Bois, Justin S., Perkins, Edward M., Patel, Dinshaw J., Aravin, Alexei A.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.85 MB

english, 2015

28

Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila

Hur, Junho K., Luo, Yicheng, Moon, Sungjin, Ninova, Maria, Marinov, Georgi K., Chung, Yun D., Aravin, Alexei A.

Journal:

Genes & Development

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

29

Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila

Ciabrelli, Filippo, Comoglio, Federico, Fellous, Simon, Bonev, Boyan, Ninova, Maria, Szabo, Quentin, Xuéreb, Anne, Klopp, Christophe, Aravin, Alexei, Paro, Renato, Bantignies, Frédéric, Cavalli, Giaco

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 4.51 MB

english, 2017

30

piRNA Biogenesis in Drosophila melanogaster

Huang, Xiawei, Fejes Tóth, Katalin, Aravin, Alexei A.

Journal:

Trends in Genetics

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

31

Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA

Liu, Yiwei, Esyunina, Daria, Olovnikov, Ivan, Teplova, Marianna, Kulbachinskiy, Andrey, Aravin, Alexei A., Patel, Dinshaw J.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.37 MB

english, 2018

32

DNA interference and beyond: structure and functions of prokaryotic Argonaute proteins

Lisitskaya, Lidiya, Aravin, Alexei A., Kulbachinskiy, Andrey

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.79 MB

english, 2018

33

The Expanded Universe of Prokaryotic Argonaute Proteins

Ryazansky, Sergei, Kulbachinskiy, Andrey, Aravin, Alexei A., Papoutsakis, Eleftherios T.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.92 MB

english, 2018

34

Programmable DNA cleavage by Ago nucleases from mesophilic bacteria Clostridium butyricum and Limnothrix rosea

Kuzmenko, Anton, Yudin, Denis, Ryazansky, Sergei, Kulbachinskiy, Andrey, Aravin, Alexei A

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 10.09 MB

english, 2019

35

The control of gene expression and cell identity by H3K9 trimethylation

Ninova, Maria, Fejes Tóth, Katalin, Aravin, Alexei A.

Journal:

Development (The Company of Biologists)

Year:

2019

Language:

english

File:

PDF, 999 KB

english, 2019

36

The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation

Ninova, Maria, Godneeva, Baira, Chen, Yung-Chia Ariel, Luo, Yicheng, Prakash, Sharan J., Jankovics, Ferenc, Erdélyi, Miklós, Aravin, Alexei A., Fejes Tóth, Katalin

Journal:

Year:

2019

Language:

english

File:

PDF, 25.00 MB

english, 2019

37

The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation

Ninova, Maria, Godneeva, Baira, Chen, Yung-Chia Ariel, Luo, Yicheng, Prakash, Sharan J., Jankovics, Ferenc, Erdélyi, Miklós, Aravin, Alexei A., Fejes Tóth, Katalin

Journal:

Year:

2019

File:

PDF, 25.00 MB

2019

38

Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus

Olina, Anna, Kuzmenko, Anton, Ninova, Maria, Aravin, Alexei A., Kulbachinskiy, Andrey, Esyunina, Daria

Journal:

Year:

2020

File:

PDF, 4.08 MB

2020

39

Pachytene piRNAs as beneficial regulators or a defense system gone rogue

Aravin, Alexei A.

Journal:

Nature Genetics

Year:

2020

File:

PDF, 1.06 MB

2020

40

DNA targeting and interference by a bacterial Argonaute nuclease

Kuzmenko, Anton, Oguienko, Anastasiya, Esyunina, Daria, Yudin, Denis, Petrova, Mayya, Kudinova, Alina, Maslova, Olga, Ninova, Maria, Ryazansky, Sergei, Leach, David, Aravin, Alexei A., Kulbachinskiy,

Journal:

Year:

2020

File:

PDF, 12.60 MB

2020

41

Recognition of double-stranded DNA by the Rhodobacter sphaeroides Argonaute protein

Lisitskaya, Lidia, Petushkov, Ivan, Esyunina, Daria, Aravin, Alexei, Kulbachinskiy, Andrey

Journal:

Biochemical and Biophysical Research Communications

Year:

2020

File:

PDF, 975 KB

2020

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